STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF38131.1Uncharacterized conserved protein, DUF885 familyt. (589 aa)    
Predicted Functional Partners:
rsmI
16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.773
SFF56805.1
Prolyl oligopeptidase Serine peptidase. MEROPS family S09A.
 
     0.713
SFF54970.1
Zn-dependent amino-or carboxypeptidase, M28 family.
  
     0.679
SFF64984.1
Iron complex outermembrane recepter protein.
  
     0.637
SFF38183.1
LppC putative lipoprotein.
       0.564
SFF38208.1
Putative endonuclease; Belongs to the UPF0102 family.
       0.564
SFF56850.1
Peptidyl-dipeptidase A.
  
     0.537
SFF68455.1
Iron complex outermembrane recepter protein.
  
     0.477
infC
Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.466
SFF68705.1
Iron complex outermembrane recepter protein.
  
     0.463
Your Current Organism:
Fontimonas thermophila
NCBI taxonomy Id: 1076937
Other names: CCUG 59713, DSM 23609, F. thermophila, Fontimonas thermophila Losey et al. 2013, Solimonas sp. HA-01, strain HA-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.