STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF46960.1Tetratricopeptide repeat-containing protein. (941 aa)    
Predicted Functional Partners:
SFF46948.1
Tetratricopeptide repeat-containing protein.
 
     0.955
SFF46972.1
Tetratricopeptide repeat-containing protein.
 
  
 0.937
SFF47008.1
Biopolymer transport protein ExbD.
 
  
 0.918
SFF47020.1
Biopolymer transport protein ExbD.
 
  
 0.918
SFF47032.1
Outer membrane transport energization protein TonB.
 
     0.908
SFF46997.1
Outer membrane transport energization protein ExbB.
 
  
 0.885
SFF46983.1
Hypothetical protein.
       0.787
SFF46934.1
Hypothetical protein.
       0.787
SFF32481.1
Rhomboid family GlyGly-CTERM serine protease.
 
     0.755
SFF51553.1
Hypothetical protein.
  
     0.657
Your Current Organism:
Fontimonas thermophila
NCBI taxonomy Id: 1076937
Other names: CCUG 59713, DSM 23609, F. thermophila, Fontimonas thermophila Losey et al. 2013, Solimonas sp. HA-01, strain HA-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.