STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF47526.1RAMP superfamily protein. (448 aa)    
Predicted Functional Partners:
SFF47650.1
CRISPR-associated protein, Cmr2 family.
 
 
 
 0.993
SFF47593.1
CRISPR-associated protein, Cmr4 family.
 
 
 
 0.982
SFF47579.1
CRISPR-associated protein, Cmr5 family.
   
 
 0.923
SFF47490.1
CRISPR-associated protein, TM1812 family.
 
   
 0.912
SFF47636.1
CRISPR-associated protein, Cmr3 family.
 
   
 0.830
SFF47443.1
Uncharacterized conserved protein.
 
   
 0.814
SFF47473.1
CRISPR-associated protein, Csx6 family.
 
     0.800
SFF47515.1
CRISPR-associated protein Csx16.
     
 0.788
SFF47504.1
Hypothetical protein.
       0.773
cas1
CRISP-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.751
Your Current Organism:
Fontimonas thermophila
NCBI taxonomy Id: 1076937
Other names: CCUG 59713, DSM 23609, F. thermophila, Fontimonas thermophila Losey et al. 2013, Solimonas sp. HA-01, strain HA-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.