STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF60936.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (311 aa)    
Predicted Functional Partners:
SFF51553.1
Hypothetical protein.
  
     0.724
SFF44865.1
Lipoprotein NlpD.
 
 
0.674
SFF51564.1
Protein CcmA, bactofilin family.
 
   
 0.664
SFF23522.1
Penicillin-binding protein 1A.
  
   
 0.581
SFF60947.1
Hypothetical protein.
       0.570
secA
Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
       0.538
SFF52887.1
Membrane-bound lytic murein transglycosylase D.
 
 0.504
SFF30669.1
N-acetylmuramoyl-L-alanine amidase.
  
   
 0.450
SFF60900.1
8-oxo-dGTPase; Belongs to the Nudix hydrolase family.
       0.416
mltG
UPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
  
   
 0.407
Your Current Organism:
Fontimonas thermophila
NCBI taxonomy Id: 1076937
Other names: CCUG 59713, DSM 23609, F. thermophila, Fontimonas thermophila Losey et al. 2013, Solimonas sp. HA-01, strain HA-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.