STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF61333.1LPS export ABC transporter protein LptC. (187 aa)    
Predicted Functional Partners:
SFF61359.1
Lipopolysaccharide export system ATP-binding protein.
  
 0.999
SFF61347.1
Lipopolysaccharide export system protein LptA.
  
 
 0.996
SFF44481.1
Lipopolysaccharide export system permease protein.
  
 
 0.920
SFF44490.1
Lipopolysaccharide export system permease protein.
  
 
 0.920
SFF61308.1
Arabinose-5-phosphate isomerase.
  
  
 0.893
SFF61320.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase); Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
  
  
 0.884
SFF61292.1
Sodium/calcium exchanger protein.
     
 0.795
SFF61280.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
       0.605
SFF61241.1
Transcriptional regulator, BolA protein family; Belongs to the BolA/IbaG family.
       0.535
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.460
Your Current Organism:
Fontimonas thermophila
NCBI taxonomy Id: 1076937
Other names: CCUG 59713, DSM 23609, F. thermophila, Fontimonas thermophila Losey et al. 2013, Solimonas sp. HA-01, strain HA-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.