STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ86640.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
SIQ86616.1
Hypothetical protein.
      
0.634
SIQ86666.1
Membrane-bound serine protease (ClpP class).
       0.533
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase); Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
       0.437
Your Current Organism:
Pontibacter lucknowensis
NCBI taxonomy Id: 1077936
Other names: CCM 7955, MTCC 11079, P. lucknowensis, Pontibacter lucknowensis Dwivedi et al. 2013, Pontibacter sp. DM9, strain DM9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.