STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM98356.1Transcriptional regulator, MarR family. (165 aa)    
Predicted Functional Partners:
SEN64430.1
DNA processing protein.
   
    0.806
SEM89643.1
comF family protein.
  
    0.751
SEM98315.1
Antitoxin CptB.
 
     0.741
SEM98279.1
Transcriptional regulator, XRE family.
       0.685
SEN32931.1
Hypothetical protein.
  
     0.682
SEM90123.1
Sulfur dehydrogenase subunit SoxD.
   
 
  0.627
SEN27371.1
Signal transduction histidine kinase.
  
    0.581
SEN55525.1
Hypothetical protein.
  
     0.570
SEO23158.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
  
 0.568
fur-2
Fur family transcriptional regulator, iron response regulator; Belongs to the Fur family.
  
    0.553
Your Current Organism:
Pseudorhodobacter antarcticus
NCBI taxonomy Id: 1077947
Other names: CGMCC 1.10836, KCTC 23700, P. antarcticus, Pseudorhodobacter antarcticus Chen et al. 2013, Pseudorhodobacter sp. ZS3-33, Rhodobacter sp. ZS3-33, strain ZS3-33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.