STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN10603.1Hypothetical protein. (74 aa)    
Predicted Functional Partners:
SEN10544.1
Cytochrome c-type biogenesis protein CcmH.
 
   
 0.880
SEN10573.1
Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.854
SEN08395.1
Hypothetical protein.
  
     0.756
SEO10331.1
Predicted secreted protein.
  
     0.570
SEM98279.1
Transcriptional regulator, XRE family.
  
     0.557
SEN45778.1
Protein of unknown function.
  
     0.512
SEN10513.1
Sarcosine oxidase subunit beta.
       0.485
SEN10479.1
Sarcosine oxidase subunit delta.
       0.468
SEN10416.1
Sarcosine oxidase subunit gamma.
       0.466
SEN27783.1
8-oxo-dGTP pyrophosphatase MutT, NUDIX family.
 
     0.457
Your Current Organism:
Pseudorhodobacter antarcticus
NCBI taxonomy Id: 1077947
Other names: CGMCC 1.10836, KCTC 23700, P. antarcticus, Pseudorhodobacter antarcticus Chen et al. 2013, Pseudorhodobacter sp. ZS3-33, Rhodobacter sp. ZS3-33, strain ZS3-33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.