STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN48794.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (332 aa)    
Predicted Functional Partners:
SEN48762.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
  0.993
SEN48720.1
TRAP transporter, DctM subunit.
 
  
  0.990
SEN48899.1
Transcriptional regulator, GntR family.
 
     0.874
SEN48941.1
Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family.
 
     0.855
SEN49112.1
Fumarate reductase flavoprotein subunit.
 
     0.846
SEN49053.1
Nicotinamidase-related amidase.
 
     0.777
SEN49014.1
N-methylhydantoinase A.
 
     0.703
SEN48975.1
N-methylhydantoinase B.
 
     0.700
SEN49081.1
2-Methylisocitrate lyase, PEP mutase family.
 
     0.665
SEN48832.1
3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
 
     0.657
Your Current Organism:
Pseudorhodobacter antarcticus
NCBI taxonomy Id: 1077947
Other names: CGMCC 1.10836, KCTC 23700, P. antarcticus, Pseudorhodobacter antarcticus Chen et al. 2013, Pseudorhodobacter sp. ZS3-33, Rhodobacter sp. ZS3-33, strain ZS3-33
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