STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN94288.1TRAP-type C4-dicarboxylate transport system, small permease component. (187 aa)    
Predicted Functional Partners:
SEN94315.1
TRAP transporter, DctM subunit.
 
  0.994
SEN94268.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
  0.990
SEN94352.1
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.854
SEN94376.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.780
SEN94405.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.776
SEN94243.1
DNA-binding transcriptional regulator, GntR family.
 
     0.674
SEN94437.1
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.570
SEN19880.1
TRAP transporter, DctM subunit.
  
  0.467
SEN48127.1
TRAP transporter, DctM subunit.
  
  0.467
SEN52807.1
TRAP transporter, DctM subunit.
  
  0.467
Your Current Organism:
Pseudorhodobacter antarcticus
NCBI taxonomy Id: 1077947
Other names: CGMCC 1.10836, KCTC 23700, P. antarcticus, Pseudorhodobacter antarcticus Chen et al. 2013, Pseudorhodobacter sp. ZS3-33, Rhodobacter sp. ZS3-33, strain ZS3-33
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