STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO18007.1TRAP transporter, DctM subunit. (441 aa)    
Predicted Functional Partners:
SEO18034.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.995
SEO17984.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
  
  0.990
SEO18054.1
Predicted N-formylglutamate amidohydrolase.
 
     0.899
SEO18072.1
Transcriptional regulator, RpiR family.
 
     0.866
SEO17947.1
Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.
 
     0.840
SEO17969.1
Glutamine synthetase.
 
     0.826
SEO17923.1
4-hydroxybutyrate dehydrogenase/hypothetical protein.
 
     0.771
SEN15747.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
    0.472
SEN08643.1
Tat (twin-arginine translocation) pathway signal sequence; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.431
Your Current Organism:
Pseudorhodobacter antarcticus
NCBI taxonomy Id: 1077947
Other names: CGMCC 1.10836, KCTC 23700, P. antarcticus, Pseudorhodobacter antarcticus Chen et al. 2013, Pseudorhodobacter sp. ZS3-33, Rhodobacter sp. ZS3-33, strain ZS3-33
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