STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO25951.1Ca2+-binding protein, RTX toxin-related. (830 aa)    
Predicted Functional Partners:
SEO33740.1
FG-GAP repeat-containing protein.
 
  0.847
SEO33865.1
FG-GAP repeat-containing protein.
 
  0.731
SEO15887.1
HlyD family secretion protein.
  
    0.626
SEN66601.1
Hemolysin-type calcium-binding repeat-containing protein.
  
 
0.590
SEM69735.1
HlyD family secretion protein.
  
    0.588
SEM91444.1
Membrane fusion protein, adhesin transport system.
  
    0.523
SEO25978.1
Hypothetical protein.
       0.523
SEM91537.1
Hypothetical protein.
   
  0.518
SEN03253.1
Hint domain-containing protein.
 
 
  0.515
SEM69709.1
ATP-binding cassette, subfamily C.
  
   0.510
Your Current Organism:
Pseudorhodobacter antarcticus
NCBI taxonomy Id: 1077947
Other names: CGMCC 1.10836, KCTC 23700, P. antarcticus, Pseudorhodobacter antarcticus Chen et al. 2013, Pseudorhodobacter sp. ZS3-33, Rhodobacter sp. ZS3-33, strain ZS3-33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.