STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB16925.1Hypothetical protein. (428 aa)    
Predicted Functional Partners:
GAB16924.1
Hypothetical protein.
 
 0.999
uvrD2
ATP-dependent DNA helicase UvrD2.
  
 0.997
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.995
GAB18485.1
Putative 5'-3' exonuclease.
   
 0.975
dinG
ATP-dependent DNA helicase DinG.
   
 0.972
GAB18734.1
Putative ATP-dependent DNA helicase.
  
 0.968
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.955
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
 0.889
GAB18040.1
Putative carbonic anhydrase.
  
   0.874
GAB19791.1
Putative sulfate transporter.
   
   0.874
Your Current Organism:
Gordonia effusa
NCBI taxonomy Id: 1077974
Other names: G. effusa NBRC 100432, Gordonia effusa NBRC 100432, Gordonia effusa str. NBRC 100432, Gordonia effusa strain NBRC 100432
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.