Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EPD54494.1 | EPD58712.1 | HMPREF1211_08439 | HMPREF1211_05651 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Hypothetical protein. | 0.658 |
EPD54494.1 | EPD60989.1 | HMPREF1211_08439 | HMPREF1211_05007 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Hypothetical protein. | 0.658 |
EPD54494.1 | EPD68737.1 | HMPREF1211_08439 | HMPREF1211_00253 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Hypothetical protein. | 0.658 |
EPD56520.1 | EPD58100.1 | HMPREF1211_06980 | HMPREF1211_05914 | Riboflavin-specific deaminase domain-containing protein. | Hypothetical protein. | 0.524 |
EPD56520.1 | EPD58712.1 | HMPREF1211_06980 | HMPREF1211_05651 | Riboflavin-specific deaminase domain-containing protein. | Hypothetical protein. | 0.516 |
EPD56520.1 | EPD60989.1 | HMPREF1211_06980 | HMPREF1211_05007 | Riboflavin-specific deaminase domain-containing protein. | Hypothetical protein. | 0.516 |
EPD56520.1 | EPD68737.1 | HMPREF1211_06980 | HMPREF1211_00253 | Riboflavin-specific deaminase domain-containing protein. | Hypothetical protein. | 0.516 |
EPD58100.1 | EPD56520.1 | HMPREF1211_05914 | HMPREF1211_06980 | Hypothetical protein. | Riboflavin-specific deaminase domain-containing protein. | 0.524 |
EPD58100.1 | EPD58712.1 | HMPREF1211_05914 | HMPREF1211_05651 | Hypothetical protein. | Hypothetical protein. | 0.595 |
EPD58100.1 | EPD60989.1 | HMPREF1211_05914 | HMPREF1211_05007 | Hypothetical protein. | Hypothetical protein. | 0.595 |
EPD58100.1 | EPD68737.1 | HMPREF1211_05914 | HMPREF1211_00253 | Hypothetical protein. | Hypothetical protein. | 0.595 |
EPD58712.1 | EPD54494.1 | HMPREF1211_05651 | HMPREF1211_08439 | Hypothetical protein. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.658 |
EPD58712.1 | EPD56520.1 | HMPREF1211_05651 | HMPREF1211_06980 | Hypothetical protein. | Riboflavin-specific deaminase domain-containing protein. | 0.516 |
EPD58712.1 | EPD58100.1 | HMPREF1211_05651 | HMPREF1211_05914 | Hypothetical protein. | Hypothetical protein. | 0.595 |
EPD58712.1 | EPD61292.1 | HMPREF1211_05651 | HMPREF1211_04317 | Hypothetical protein. | Translation elongation factor G. | 0.482 |
EPD58712.1 | EPD66547.1 | HMPREF1211_05651 | HMPREF1211_00802 | Hypothetical protein. | Tetracycline resistance protein tetM. | 0.482 |
EPD58712.1 | EPD68163.1 | HMPREF1211_05651 | HMPREF1211_00709 | Hypothetical protein. | Small GTP-binding protein domain protein. | 0.482 |
EPD58712.1 | EPD68737.1 | HMPREF1211_05651 | HMPREF1211_00253 | Hypothetical protein. | Hypothetical protein. | 0.500 |
EPD58712.1 | fusA | HMPREF1211_05651 | HMPREF1211_01643 | Hypothetical protein. | Elongation factor G 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.482 |
EPD58712.1 | rph | HMPREF1211_05651 | HMPREF1211_08303 | Hypothetical protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.587 |
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