STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPD64642.1Hypothetical protein. (520 aa)    
Predicted Functional Partners:
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 2 subfamily.
       0.789
EPD64640.1
Branched-chain amino acid aminotransferase.
       0.694
EPD69023.1
Hypothetical protein; Belongs to the alkaline phosphatase family.
  
 
 0.611
EPD64085.1
Hypothetical protein.
  
     0.542
EPD67436.1
Hypothetical protein.
  
     0.474
EPD56714.1
HAD hydrolase, family IA.
    
  0.470
EPD67491.1
Hypothetical protein.
  
     0.464
folE
GTP cyclohydrolase 1.
    
 0.449
EPD54485.1
Hypothetical protein.
  
     0.448
EPD56996.1
Hypothetical protein.
  
     0.447
Your Current Organism:
Streptomyces sp. HGB0020
NCBI taxonomy Id: 1078086
Other names: S. sp. HGB0020
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