STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPD91986.1(Dimethylallyl)adenosine tRNA methylthiotransferase miaB. (494 aa)    
Predicted Functional Partners:
EPD91985.1
Hypothetical protein.
  
    0.808
EPD91987.1
Hypothetical protein.
       0.686
EPD92141.1
Ribosomal RNA small subunit methyltransferase B.
  
  
 0.650
EPD90087.1
Ribonuclease PH.
  
 
   0.640
EPD92119.1
Signal peptidase I.
   
    0.607
EPD82344.1
Signal peptidase I.
   
    0.607
EPD91988.1
Pyruvate/2-ketoisovalerate family 2-oxoacid:acceptor oxidoreductase, beta subunit.
  
    0.604
EPD91989.1
2-oxoacid:acceptor oxidoreductase, alpha subunit.
       0.601
EPD88504.1
Hypothetical protein.
  
   
 0.575
EPD81010.1
tRNA dimethylallyltransferase.
 
  
 0.565
Your Current Organism:
Paenibacillus sp. HGH0039
NCBI taxonomy Id: 1078505
Other names: P. sp. HGH0039
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.