STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynDPeptidoglycan-N-acetylglucosamine deacetylase. (439 aa)    
Predicted Functional Partners:
pgaC_1
Poly-beta-1,6-N-acetyl-D-glucosamine synthase.
 
  
 0.664
pgaC_2
Beta-monoglucosyldiacylglycerol synthase.
  
  
 0.528
BVIR_2381
Hypothetical protein.
  
     0.485
BVIR_963
Hypothetical protein.
  
     0.453
BVIR_1088
Hypothetical protein.
       0.444
BVIR_1257
Hypothetical protein.
  
     0.439
BVIR_2388
Hypothetical protein.
 
    0.418
BVIR_1982
Hypothetical protein.
  
     0.415
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.