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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
siaT_5Sialic acid TRAP transporter permease protein SiaT. (427 aa)    
Predicted Functional Partners:
yiaO_2
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
  
 0.985
BVIR_1150
Tripartite ATP-independent periplasmic transporters, DctQ component.
 
 0.934
dctP_1
C4-dicarboxylate-binding periplasmic protein precursor.
  
 0.927
siaT_1
Sialic acid TRAP transporter permease protein SiaT.
  
  
 
0.917
siaT_3
Sialic acid TRAP transporter permease protein SiaT.
  
  
 
0.914
BVIR_488
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM.
 
 0.864
siaT_2
Sialic acid TRAP transporter permease protein SiaT.
 
 
 0.861
yiaO_1
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
  
 0.855
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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