STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemN_1Oxygen-independent coproporphyrinogen-III oxidase 1. (457 aa)    
Predicted Functional Partners:
BVIR_1163
ChuX-like family protein.
  
 0.995
porB
Pyruvate-flavodoxin oxidoreductase.
 
   
 0.595
gltB_1
Ferredoxin-dependent glutamate synthase 1.
     
 0.579
fixP
Cbb3-type cytochrome c oxidase subunit FixP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
  
 0.562
BVIR_2882
Hypothetical protein; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.531
hxuC_2
Heme/hemopexin utilization protein C precursor.
 
   
 0.517
BVIR_2877
Ubp3 associated protein Bre5.
  
  
 0.516
yhbU_1
Putative protease YhbU precursor.
 
    0.514
BVIR_2881
Cytochrome C oxidase, mono-heme subunit/FixO.
  
  
 0.501
rlmN_1
Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
 
   
 0.500
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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