STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_119PRC-barrel domain protein. (172 aa)    
Predicted Functional Partners:
BVIR_1696
Blue-light-activated histidine kinase.
 
     0.580
pdtaR_2
Putative transcriptional regulatory protein pdtaR.
 
    0.567
yhhT_3
AI-2 transport protein TqsA.
 
     0.555
BVIR_2660
Blue-light-activated histidine kinase.
 
    0.553
BVIR_102
Two-component response regulator.
  
     0.461
BVIR_118
Possibl zinc metallo-peptidase.
       0.443
BVIR_991
Chemotactic signal-response protein CheL.
   
    0.438
rpiA_1
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
   
    0.426
cnrH_1
ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.404
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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