Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_1237Hypothetical protein. (198 aa)    
Predicted Functional Partners:
BVIR_1232
Hypothetical protein.
     0.984
BVIR_1238
Hypothetical protein.
     0.983
BVIR_1233
Hypothetical protein.
 
     0.956
BVIR_1236
ATP-dependent RNA helicase DbpA.
 
     0.955
BVIR_1241
Hypothetical protein.
 
     0.816
BVIR_1230
Hypothetical protein.
 
     0.796
BVIR_1231
Hypothetical protein.
 
     0.793
BVIR_1234
Hypothetical protein.
       0.792
BVIR_1235
Hypothetical protein.
       0.778
BVIR_1227
Hypothetical protein.
  
     0.771
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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