STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mcl2_1(3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family. (299 aa)    
Predicted Functional Partners:
BVIR_1261
Bifunctional protein PaaZ.
 
  
 0.943
mcl2_2
(3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.921
frc_2
Succinyl-CoA:(R)-benzylsuccinate CoA-transferase subunit BbsF; Belongs to the CoA-transferase III family.
 
  
 0.903
fucA
L-fuculose phosphate aldolase.
   
    0.693
BVIR_1262
Hypothetical protein.
       0.526
BVIR_1259
Hypothetical protein; Belongs to the MT-A70-like family.
       0.481
frc_1
Formyl-coenzyme A transferase; Belongs to the CoA-transferase III family.
 
  
 0.478
tme
NADP-dependent malic enzyme.
 
  
 0.452
porB
Pyruvate-flavodoxin oxidoreductase.
     
 0.444
accA1_3
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
  
  
 0.407
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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