STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssuB_1Aliphatic sulfonates import ATP-binding protein SsuB. (238 aa)    
Predicted Functional Partners:
ssuC_1
Putative aliphatic sulfonates transport permease protein SsuC.
  
 0.956
modB_1
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.907
ssuC_2
Putative aliphatic sulfonates transport permease protein SsuC.
  
 0.895
BVIR_1353
Hypothetical protein.
 
  
 0.725
cmpB_3
Putative aliphatic sulfonates transport permease protein SsuC.
  
 0.693
cmpB_1
Bicarbonate transport system permease protein CmpB.
 
  
 0.682
cmpB_2
Bicarbonate transport system permease protein CmpB.
 
  
 0.679
irtB_2
Iron import ATP-binding/permease protein IrtB.
  
     0.602
BVIR_2958
NMT1/THI5 like protein.
 
  
 0.518
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.490
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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