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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_1482Vitamin B12 transporter BtuB. (690 aa)    
Predicted Functional Partners:
BVIR_1866
Hypothetical protein.
 
 
 0.700
cirA
Pesticin receptor precursor.
 
  
 0.671
BVIR_1871
Gram-negative bacterial tonB protein.
 
 
 0.666
BVIR_2526
Gram-negative bacterial tonB protein.
 
 
 0.658
BVIR_1289
Vitamin B12-binding protein.
 
  
 0.642
fecA_1
Fe(3+) dicitrate transport protein FecA precursor.
 
 
 0.636
modE_2
Molybdenum-pterin-binding protein MopA.
 
     0.635
BVIR_1872
Ferripyoverdine receptor precursor.
 
 
 0.625
BVIR_1842
Hypothetical protein.
 
 
 0.589
tolQ_1
Biopolymer transport protein ExbB.
 
  
 0.569
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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