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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
catJ3-oxoadipate CoA-transferase subunit B. (270 aa)    
Predicted Functional Partners:
gctA
Glutaconate CoA-transferase subunit A.
 0.999
gatA_2
Acylamidase.
    
  0.902
cmpB_1
Bicarbonate transport system permease protein CmpB.
       0.773
ssuB_2
Aliphatic sulfonates import ATP-binding protein SsuB.
       0.773
BVIR_1587
Hypothetical protein.
       0.773
BVIR_1584
NMT1/THI5 like protein.
       0.752
BVIR_2156
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.665
bfmBAB
2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
  
 0.653
tme
NADP-dependent malic enzyme.
  
  
 0.516
algA_1
Alginate biosynthesis protein AlgA; Belongs to the mannose-6-phosphate isomerase type 2 family.
     
 0.500
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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