Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_166Cell division ABC transporter subunit FtsX. (312 aa)    
Predicted Functional Partners:
ftsE
Cell division ATP-binding protein FtsE.
 
 0.999
BVIR_59
Murein hydrolase activator EnvC precursor.
 
 
 
 0.934
BVIR_164
Hypothetical protein.
     0.884
BVIR_472
Hypothetical protein.
  
     0.702
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.637
BVIR_2182
Outer membrane protein assembly factor BamE.
  
     0.633
lptD_1
LPS-assembly protein LptD precursor; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
  
 0.624
BVIR_1207
Hypothetical protein.
   
 
 0.600
BVIR_2347
NlpC/P60 family protein.
   
 
 0.600
ykfC
Gamma-D-glutamyl-L-lysine endopeptidase.
   
 
 0.600
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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