STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arnTUndecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase. (574 aa)    
Predicted Functional Partners:
arnC
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
 
  
 0.915
yfdH
Hypothetical protein.
 
  
 0.756
BVIR_748
Hypothetical protein.
  
     0.688
msbB
Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase.
 
   
 0.687
BVIR_760
Glycosyl transferase family 2.
 
  
 0.637
BVIR_684
Putative permease YjgP/YjgQ family protein.
 
     0.542
BVIR_2711
Hypothetical protein.
 
  
 0.534
BVIR_2661
Beta-lactamase hydrolase-like protein.
  
     0.508
BVIR_922
Hypothetical protein.
 
     0.459
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.454
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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