STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_1862Hypothetical protein. (168 aa)    
Predicted Functional Partners:
BVIR_1864
Hypothetical protein.
  
  
 0.837
BVIR_1865
Hypothetical protein.
  
  
 0.820
BVIR_1869
POTRA domain, ShlB-type.
  
  
 0.819
tolQ_1
Biopolymer transport protein ExbB.
  
 
 0.747
ppiD_2
Peptidyl-prolyl cis-trans isomerase D.
  
  
 0.720
exbD_2
Biopolymer transport protein ExbD.
  
   0.678
BVIR_1861
Hypothetical protein.
       0.675
BVIR_1860
Hypothetical protein.
       0.655
BVIR_1866
Hypothetical protein.
     
 0.556
nagZ
Beta-hexosaminidase.
  
  
 0.513
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.