STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_1892Putative periplasmic iron-binding protein precursor; Belongs to the bacterial solute-binding protein 9 family. (318 aa)    
Predicted Functional Partners:
mntB_3
Manganese transport system membrane protein MntB.
  
 0.993
fhuC_1
Iron(3+)-hydroxamate import ATP-binding protein FhuC.
  
 0.958
mntB_2
Manganese transport system membrane protein MntB.
  
 0.930
mntB_1
Manganese transport system membrane protein MntB.
  
 0.921
BVIR_1521
Putative ABC transporter ATP-binding protein.
  
 0.900
yjiA_1
Putative metal chaperone YciC.
  
  
 0.703
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.546
rpmB_1
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.537
BVIR_1894
WD domain, G-beta repeat.
 
     0.523
yjiA_2
Putative GTP-binding protein YjiA.
  
  
 0.490
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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