STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hdaHHistone deacetylase-like amidohydrolase. (308 aa)    
Predicted Functional Partners:
cbbX
Stage V sporulation protein K.
   
 0.913
puo
Putrescine oxidase.
   
 0.890
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
    
 0.842
cobB_1
NAD-dependent protein deacetylase.
    
 0.840
BVIR_1407
Calerythrin.
    
 0.824
BVIR_2214
EF hand.
    
 0.824
rapA
RNA polymerase-associated protein RapA.
    
 0.818
BVIR_1695
RNA polymerase-associated protein RapA.
    
 0.818
BVIR_2359
Trypsin.
    
  0.804
ndk_1
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
   0.797
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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