STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdaHHistone deacetylase-like amidohydrolase. (308 aa)    
Predicted Functional Partners:
puo
Putrescine oxidase.
   
 0.922
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
    
 0.889
cbbX
Stage V sporulation protein K.
   
 0.877
cobB_1
NAD-dependent protein deacetylase.
    
 
 0.781
rapA
RNA polymerase-associated protein RapA.
    
 0.776
BVIR_1695
RNA polymerase-associated protein RapA.
    
 0.776
gap
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 
   
 0.696
serA
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.579
BVIR_1894
WD domain, G-beta repeat.
    
 0.577
BVIR_390
WD domain, G-beta repeat.
    
 0.577
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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