STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_1938Hypothetical protein. (287 aa)    
Predicted Functional Partners:
kdsA_1
2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family.
  
  
 0.811
BVIR_1937
Hypothetical protein.
       0.773
BVIR_2814
Phasin protein.
  
     0.769
BVIR_1463
Branched-chain amino acid transport protein (AzlD).
  
     0.763
emrB_1
Multidrug export protein EmrB.
       0.754
BVIR_2730
AsmA family protein.
  
     0.740
BVIR_1462
AzlC protein.
  
     0.737
BVIR_827
Hypothetical protein.
  
     0.689
omp2b
Porin omp2b precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.669
BVIR_2475
Hypothetical protein.
  
     0.663
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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