STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygfZtRNA-modifying protein YgfZ; Belongs to the GcvT family. (294 aa)    
Predicted Functional Partners:
BVIR_1980
Hypothetical protein.
       0.641
ubiH
2-octaprenyl-6-methoxyphenol hydroxylase.
  
    0.623
hisI
Phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.
      0.577
cysG_2
Siroheme synthase.
     
 0.530
BVIR_1692
Hypothetical protein.
  
     0.509
BVIR_292
Biotin biosynthesis protein BioC.
  
     0.499
erpA
Iron-sulfur cluster insertion protein ErpA; Belongs to the HesB/IscA family.
 
 
 0.486
iscA_1
Iron-binding protein IscA; Belongs to the HesB/IscA family.
 
 
 0.478
grxD
Glutaredoxin-4; Belongs to the glutaredoxin family. Monothiol subfamily.
  
   
 0.457
BVIR_1981
Hypothetical protein.
       0.450
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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