STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Coexpression
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[Homology]
Score
yqaB_2Fructose-1-phosphate phosphatase YqaB. (227 aa)    
Predicted Functional Partners:
rimM_1
Ribosome maturation factor RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.798
trmD_1
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.792
BVIR_719
Phosphotransferase enzyme family protein.
  
    0.780
malL
Oligo-1,6-glucosidase.
 
  
 0.676
queG
Epoxyqueuosine reductase.
      0.590
glgX_2
Glycogen debranching enzyme; Belongs to the glycosyl hydrolase 13 family.
 
   
 0.579
rplS_1
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
       0.522
pfkB
Putative phosphofructokinase PfkB; Belongs to the carbohydrate kinase PfkB family.
 
    0.460
rpsP_1
30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
       0.448
pgi_1
Glucose-6-phosphate isomerase.
 
 
 0.446
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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