STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligT2'-5'-RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (177 aa)    
Predicted Functional Partners:
tesA
Acyl-CoA thioesterase I precursor.
      0.809
phhB
Putative pterin-4-alpha-carbinolamine dehydratase.
       0.746
BVIR_2501
Calcineurin-like phosphoesterase.
 
     0.497
lolD_2
Putative ABC transporter ATP-binding protein.
       0.496
BVIR_17
FtsX-like permease family protein.
       0.494
fes
Enterochelin esterase.
  
  
 0.464
BVIR_1616
Rhomboid family protein.
  
     0.424
BVIR_118
Possibl zinc metallo-peptidase.
 
     0.412
BVIR_37
Hypothetical protein.
  
     0.411
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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