STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_2034Membrane dipeptidase (Peptidase family M19). (324 aa)    
Predicted Functional Partners:
puuB_3
4-methylaminobutanoate oxidase (formaldehyde-forming).
 
    0.785
BVIR_2035
Hypothetical protein.
       0.773
soxB
Sarcosine oxidase subunit beta.
 
    0.746
BVIR_2027
Hydrogen cyanide synthase subunit HcnB.
 
    0.744
BVIR_2028
Hydrogen cyanide synthase subunit HcnA.
 
     0.537
livJ
Leu/Ile/Val-binding protein precursor.
       0.527
livF_5
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
       0.527
lptB_3
Lipopolysaccharide export system ATP-binding protein LptB.
       0.527
BVIR_2032
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
       0.527
livH_5
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
       0.527
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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