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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
puuB_34-methylaminobutanoate oxidase (formaldehyde-forming). (447 aa)    
Predicted Functional Partners:
BVIR_2027
Hydrogen cyanide synthase subunit HcnB.
 
 0.936
gcvT
Aminomethyltransferase.
 
 
 0.911
BVIR_2028
Hydrogen cyanide synthase subunit HcnA.
 
    0.798
BVIR_2034
Membrane dipeptidase (Peptidase family M19).
 
    0.785
BVIR_2035
Hypothetical protein.
       0.655
dgdA
2,2-dialkylglycine decarboxylase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.633
soxB
Sarcosine oxidase subunit beta.
 
    
0.570
puuB_1
Gamma-glutamylputrescine oxidoreductase.
 
     0.558
alr1
Alanine racemase, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.527
lptB_3
Lipopolysaccharide export system ATP-binding protein LptB.
       0.459
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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