STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjiA_2Putative GTP-binding protein YjiA. (344 aa)    
Predicted Functional Partners:
cobN_2
Aerobic cobaltochelatase subunit CobN.
 
  
 0.943
nikMN
Fused nickel transport protein NikMN.
  
  
 0.784
nikQ
Nickel transport protein NikQ.
  
    0.775
cbiO
Cobalt import ATP-binding protein CbiO.
       0.773
BVIR_2117
Hypothetical protein.
       0.773
cobL
Precorrin-6Y C(5,15)-methyltransferase [decarboxylating].
 
   
 0.737
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.600
dksA_1
RNA polymerase-binding transcription factor DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.522
rpmB_1
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.512
BVIR_2119
Nickel uptake substrate-specific transmembrane region.
       0.502
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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