Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
cbiOCobalt import ATP-binding protein CbiO. (234 aa)    
Predicted Functional Partners:
nikQ
Nickel transport protein NikQ.
 
 0.998
nikMN
Fused nickel transport protein NikMN.
 
 
 0.993
BVIR_2119
Nickel uptake substrate-specific transmembrane region.
 
  
 0.982
BVIR_2117
Hypothetical protein.
 
     0.960
bioN
Energy-coupling factor transporter transmembrane protein BioN.
 
 
 0.906
cysA_3
Sulfate/thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
  
 
0.896
bioY
Biotin transporter BioY.
 
 
 
 0.802
metN
Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
     
0.794
cobN_2
Aerobic cobaltochelatase subunit CobN.
       0.773
yjiA_2
Putative GTP-binding protein YjiA.
       0.773
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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