Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nikMNFused nickel transport protein NikMN. (204 aa)    
Predicted Functional Partners:
nikQ
Nickel transport protein NikQ.
 
 
 0.997
cbiO
Cobalt import ATP-binding protein CbiO.
 
 
 0.993
BVIR_2119
Nickel uptake substrate-specific transmembrane region.
  
 0.991
BVIR_2117
Hypothetical protein.
    0.986
cobN_2
Aerobic cobaltochelatase subunit CobN.
  
  
 0.798
yjiA_2
Putative GTP-binding protein YjiA.
  
  
 0.781
bioN
Energy-coupling factor transporter transmembrane protein BioN.
  
  
 0.711
cobL
Precorrin-6Y C(5,15)-methyltransferase [decarboxylating].
  
  
 0.697
cysG_2
Siroheme synthase.
     
 0.627
bioM
Biotin transport ATP-binding protein BioM.
 
  
 0.435
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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