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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhF_2Putative ABC transporter ATP-binding protein YbhF. (317 aa)    
Predicted Functional Partners:
ybhS
Inner membrane transport permease YbhS.
  
 0.996
ttgA_1
Toluene efflux pump periplasmic linker protein TtgD precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.964
yhhJ
Inner membrane transport permease YhhJ.
  
 0.957
fadR
Fatty acid metabolism regulator protein.
       0.780
BVIR_2228
Hypothetical protein.
       0.773
livF_6
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
     
0.579
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.453
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.426
livF_7
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
     
0.424
macA_1
Multidrug resistance protein MdtN.
  
 0.423
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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