STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fer1Ferredoxin-1. (63 aa)    
Predicted Functional Partners:
BVIR_2286
NifZ domain protein.
 
     0.937
BVIR_2285
NifT/FixU protein.
 
     0.908
BVIR_2287
Leucine rich repeat variant.
 
    0.899
porB
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.807
BVIR_2289
FeMo cofactor biosynthesis protein NifB.
 
     0.777
BVIR_2265
Hypothetical protein.
 
     0.756
nifW
Nitrogenase-stabilizing/protective protein NifW 2; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
   
 0.721
BVIR_2273
Hypothetical protein.
 
    0.645
BVIR_2272
Dinitrogenase iron-molybdenum cofactor.
 
     0.638
fdxB
Ferredoxin-3.
 
   
 0.602
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.