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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pleC_3Non-motile and phage-resistance protein. (759 aa)    
Predicted Functional Partners:
divK
Polar-differentiation response regulator DivK.
 0.999
pleD_2
Response regulator PleD.
 
 0.984
cheA_1
Chemotaxis protein CheA.
  
 
 0.970
bfmBAB
2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.959
barA
Signal transduction histidine-protein kinase BarA.
 
 
0.946
pleC_2
Non-motile and phage-resistance protein.
  
 
 
0.930
fixL_2
Sensor protein FixL.
 
 
0.913
BVIR_1662
Blue-light-activated histidine kinase.
 
 
 0.902
frzE
Gliding motility regulatory protein.
 
 
 0.875
cheY_2
Chemotaxis protein CheY.
 
 
 0.864
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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