STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_2413D-amino acid dehydrogenase small subunit. (426 aa)    
Predicted Functional Partners:
BVIR_2411
GtrA-like protein.
 
     0.951
BVIR_2414
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase.
 
    0.935
BVIR_2415
Putative oxidoreductase.
 
     0.912
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
  
 0.907
BVIR_2412
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
 
     0.891
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.859
BVIR_2417
Decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
 
   
 0.855
dprE1_2
Putative decaprenylphosphoryl-beta-D-ribose oxidase.
 
     0.806
BVIR_293
Ribose-phosphate pyrophosphokinase.
  
    0.664
bchD
Magnesium-chelatase 60 kDa subunit.
 
  
 0.582
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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