STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dprE1_2Putative decaprenylphosphoryl-beta-D-ribose oxidase. (453 aa)    
Predicted Functional Partners:
BVIR_2417
Decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
 
  
 0.964
BVIR_2415
Putative oxidoreductase.
  
 0.943
BVIR_2411
GtrA-like protein.
 
     0.826
BVIR_2413
D-amino acid dehydrogenase small subunit.
 
     0.806
BVIR_2414
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase.
 
    0.690
lgrD_1
Carboxylic acid reductase.
 
 
 0.602
BVIR_2412
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
 
     0.542
gltB_1
Ferredoxin-dependent glutamate synthase 1.
     
 0.525
aruC
Succinylornithine transaminase/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
      0.495
tme
NADP-dependent malic enzyme.
  
  
 0.491
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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