STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_2471Dihem cytochrome c. (177 aa)    
Predicted Functional Partners:
shp
Cytochrome c-type protein SHP precursor.
 
    0.938
yceJ
Hypothetical protein.
 
     0.618
BVIR_488
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM.
  
     0.535
cph2_5
Phytochrome-like protein cph2.
   
 
 0.515
cph2_1
Phytochrome-like protein cph2.
   
 
 0.515
BVIR_1785
Hypothetical protein.
 
     0.477
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.420
BVIR_2473
Hypothetical protein.
       0.420
BVIR_1472
Dinitrogenase iron-molybdenum cofactor.
  
     0.410
BVIR_1475
Hypothetical protein.
  
   
 0.403
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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