STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_2526Gram-negative bacterial tonB protein. (278 aa)    
Predicted Functional Partners:
exbD_3
Biopolymer transport protein ExbD.
 
 
 0.927
exbB_2
Biopolymer transport protein ExbB.
 
 
 0.916
btuB
Vitamin B12 transporter BtuB precursor.
 
 
 
 0.786
hxuC_1
Heme/hemopexin utilization protein C precursor.
 
 
 0.777
hxuC_2
Heme/hemopexin utilization protein C precursor.
 
 
 0.763
BVIR_1482
Vitamin B12 transporter BtuB.
 
 
 0.658
BVIR_1481
Vitamin B12 transporter BtuB.
 
 
 0.651
cirA
Pesticin receptor precursor.
 
 
 0.647
exbD_1
Biopolymer transport protein ExbD.
  
 
 0.639
exbD_4
Biopolymer transport protein ExbD.
  
 
 0.639
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.