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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hupR1_1Hydrogenase transcriptional regulatory protein hupR1. (486 aa)    
Predicted Functional Partners:
cheA_1
Chemotaxis protein CheA.
  
 
 0.813
hypE
Hydrogenase expression/formation protein HypE.
  
    0.783
hypD
Hydrogenase expression/formation protein HypD; Belongs to the HypD family.
     
 0.781
BVIR_516
RNA polymerase sigma-54 factor 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.780
BVIR_2532
Hydrogenase assembly chaperone.
  
   0.777
hypF
Carbamoyltransferase HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.
  
    0.747
BVIR_1662
Blue-light-activated histidine kinase.
  
 
 0.745
hypC
Hydrogenase isoenzymes formation protein HypC.
 
   0.707
BVIR_2540
Hydrogenase-1 operon protein HyaE; Belongs to the HupG/HyaE family.
 
    0.702
hupC
Putative Ni/Fe-hydrogenase B-type cytochrome subunit.
 
     0.694
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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