Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_253Hybrid sensory histidine kinase TorS. (275 aa)    
Predicted Functional Partners:
cheA_1
Chemotaxis protein CheA.
 
   
 0.730
cheY_3
Chemotaxis protein CheY.
 
 
 
 0.682
BVIR_2709
Chemotaxis regulator CheZ.
  
     0.671
BVIR_1012
Blue-light-activated protein.
   
 
 0.641
BVIR_953
Chemotaxis phosphatase, CheZ.
  
     0.607
pleD_1
Response regulator PleD.
   
 
 0.592
pleD_2
Response regulator PleD.
   
 
 0.592
BVIR_2590
Flagellar assembly protein H.
  
     0.566
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
     
 0.546
BVIR_1003
Hypothetical protein.
  
     0.523
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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