STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjiA_3Putative GTP-binding protein YjiA. (372 aa)    
Predicted Functional Partners:
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.600
BVIR_1894
WD domain, G-beta repeat.
 
     0.556
BVIR_390
WD domain, G-beta repeat.
 
     0.529
cobL
Precorrin-6Y C(5,15)-methyltransferase [decarboxylating].
     
 0.522
dksA_1
RNA polymerase-binding transcription factor DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.522
rpmB_1
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.512
BVIR_1520
Putative periplasmic iron-binding protein precursor; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.490
BVIR_1892
Putative periplasmic iron-binding protein precursor; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.490
dacA_2
D-alanyl-D-alanine carboxypeptidase DacA precursor; Belongs to the peptidase S11 family.
       0.435
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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