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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thcDRhodocoxin reductase. (410 aa)    
Predicted Functional Partners:
BVIR_1818
Rubredoxin.
 
 
 0.959
hybE
Hydrogenase-2 operon protein HybE.
  
 
 0.901
sir_1
Sulfite reductase [ferredoxin].
   
 0.782
BVIR_2539
Hypothetical protein.
  
 
 0.771
BVIR_2617
2-phospho-L-lactate guanylyltransferase.
       0.751
BVIR_965
Ferredoxin-6.
 
  
 0.750
mltB_3
Membrane-bound lytic murein transglycosylase B precursor.
       0.741
cysG_2
Siroheme synthase.
 
  
 0.696
gltB_1
Ferredoxin-dependent glutamate synthase 1.
  
  
 0.694
cysG_1
Siroheme synthase; Belongs to the precorrin methyltransferase family.
  
 0.553
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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